PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07944g03004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 394aa    MW: 44518.1 Da    PI: 7.2213
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07944g03004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.9e-16148197155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+G+++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Niben101Scf07944g03004.1 148 SQYRGITFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 197
                               78*******************......55************************997 PP

2AP243.48.6e-14240290155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Niben101Scf07944g03004.1 240 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 290
                               89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-8148197IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-15148206IPR016177DNA-binding domain
PROSITE profilePS5103217.385149205IPR001471AP2/ERF domain
SMARTSM003801.6E-30149211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-17149205IPR001471AP2/ERF domain
PfamPF008472.3E-9240290IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-17240300IPR016177DNA-binding domain
CDDcd000185.01E-25240298No hitNo description
SMARTSM003802.3E-31241304IPR001471AP2/ERF domain
PROSITE profilePS5103215.672241298IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-16241299IPR001471AP2/ERF domain
PRINTSPR003673.8E-6242253IPR001471AP2/ERF domain
PRINTSPR003673.8E-6280300IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MWNLNDSPNR RMEDESEEGC SSPIELDEKG KVGSVSNSSS SALVIEEEED GEKGKKKRNT  60
PSKIFGFSVN NDNFSLESEP PVTRQFFPVD ESEMGGGSMN FPRAQWAGVK FCQSEPRGNT  120
IVGNPTEVSQ QQQQPIKKSR RGPRSRSSQY RGITFYRRTG RWESHIWDCG KQVYLGGFDT  180
AHAAARAYDR AAIKFRGVEA DINFNLEDYE ADLKQMTNLT KEEFVHVLRR QSTGFPRGSS  240
KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDTEVEAARA YDKAAIKCNG KDAVTNFDRS  300
IYENELNSTE SADHAGDHNL DLSLGGSNSK ESSREMGDNR GQNSSSLQLD AHWWHQESKL  360
PSPIGFDGRR RDGYNETETL QLLSKYSRLF AAKY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016482630.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X2
SwissprotP479271e-133AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A097BTY80.0A0A097BTY8_TOBAC; AP2 transcription factor SlAP2c
STRINGPGSC0003DMT4000165850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-127AP2 family protein